Pairwise Alignment:

FAST / APPROXIMATE

  • K-tuple(word) size:
  • Window size:
  • Gap Penalty:
  • Number of Best Diagonals:
  • Scoring Method:
SLOW / ACCURATE
  • Gap Open Penalty: (0.0-100.0)
  • Gap Extension Penalty: (0.0-10.0)
  • Select Weight Matrix:
Sequence type: PROTEIN DNA

Enter your sequences:

(at least 2 sequences)

Paste your sequences here : (EXAMPLE)

Support Formats: FASTA (Pearson), NBRF/PIR, EMBL/Swiss Prot, GDE, CLUSTAL, and GCG/MSF

Multiple Alignment Gap Open Penalty:
Gap Extension Penalty:
Select Weight Matrix:

Maintained by Lab. of Dr. PC Lyu. Life Science, National Tsing Hua University.

Designed by jong@life.nthu.edu.tw