PHD predictions for fragment of prio_human

Different levels of data:

PHD brief
PHD normal
PHD detail

PHDsec summary overall your protein can be classified as:
mixed given the following classes:
- 'all-alpha': %H > 45% AND %E < 5%
- 'all-beta': %H < 5% AND %E > 45%
- 'alpha-beta': %H > 30% AND %E > 20%
- 'mixed': all others

Predicted secondary structure composition for your protein:

%H: 0.0 %E: 11.7 %L: 88.3

Residue composition for your protein:

%A: 5.0 %C: 1.7 %D: 2.8 %E: 1.7 %F: 1.7

%G: 23.3 %H: 5.0 %I: 1.1 %K: 3.9 %L: 3.9

%M: 4.4 %N: 5.6 %P: 8.3 %Q: 5.6 %R: 4.4

%S: 5.0 %T: 2.2 %V: 3.9 %W: 5.0 %Y: 5.6

AA : amino acid sequence

PHD_sec: PHD predicted secondary structure: H=helix, E=extended (sheet), blank=other (loop)
PHD = PHD: Profile network prediction HeiDelberg

Rel_sec: reliability index for PHDsec prediction (0=low to 9=high)
Note: for the brief presentation strong predictions marked by '*'

SUB_sec: subset of the PHDsec prediction, for all residues with an expected average accuracy > 82% (tables in header)
NOTE: for this subset the following symbols are used:
L: is loop (for which above ' ' is used)
.: means that no prediction is made for this residue, as the reliability is: Rel < 5

pH_sec: 'probability' for assigning helix (1=high, 0=low)

pE_sec: 'probability' for assigning strand (1=high, 0=low)

pL_sec: 'probability' for assigning neither helix, nor strand (1=high, 0=low)

P_3_acc: PHD predicted relative solvent accessibility (acc) in 3 states: b = 0-9%, i = 9-36%, e = 36-100%.

Rel_acc: reliability index for PHDacc prediction (0=low to 9=high)
Note: for the brief presentation strong predictions marked by '*'

SUB_acc: subset of the PHDacc prediction, for all residues with an expected average correlation > 0.69 (tables in header)
NOTE: for this subset the following symbols are used:
I: is intermediate (for which above ' ' is used)
.: means that no prediction is made for this residue, as the reliability is: Rel < 4

PHD_acc: PHD predicted relative solvent accessibility (acc) in 10 states: a value of n (=0-9) corresponds to a relative acc. of between n*n % and (n+1)*(n+1) % (e.g. for n=5: 16-25%).

PHD results (brief)

PHD results (normal)

PHD results (detail)

....,....1....,....2....,....3....,....4....,....5....,....6....,....7....,....8....,....9....,....10...,....11...,....12...,....13...,....14...,....15...,....16...,....17...,....18 AA MANLGCWMLVLFVATWSDLGLCKKRPKPGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQGGGTHSQWNKPSKPKTNMKHMAGAAAAGAVVGGLGGYMLGSAMSRPIIHFGSDYEDRYYRENMHRYPNQVYYRPMDEYSNQNNFVHDCV pH_sec 1.0 pH_sec pH_sec 0.9 pH_sec pH_sec 0.8 pH_sec pH_sec 0.7 pH_sec pH_sec 0.6 pH_sec pH_sec . . . . 0.5 pH_sec pH_sec . .... ... .... ......... ... ... 0.4 pH_sec pH_sec . .. . ............... ...... ...... .......... ..... ...... ........ .. . 0.3 pH_sec pH_sec .... . .. .... .... ......................................................... . ............................... ... . . ... 0.2 pH_sec ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ pE_sec ..... 1.0 pE_sec pE_sec ........ 0.9 pE_sec pE_sec ........ . 0.8 pE_sec pE_sec .......... ... .. 0.7 pE_sec pE_sec ........... .... .. . 0.6 pE_sec pE_sec .............. . ..... .... 0.5 pE_sec pE_sec ............... .... .. ....... .... 0.4 pE_sec pE_sec ................ .. ..... .... ......... ..... 0.3 pE_sec pE_sec .................. . .. .. ..... ....................... ...... 0.2 pE_sec ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ pL_sec . . 1.0 pL_sec pL_sec . ........... .. ... . . .. .. ...... .... ..... .. ..... . 0.9 pL_sec pL_sec .. ...................................... ... ..... ... .... ................. . . . ..... ...... . .... ...... . 0.8 pL_sec pL_sec .. ............................................... ......... ..... ..... .... .................. .......... .................. .. ..... ......... .. 0.7 pL_sec pL_sec .. .................................................................................................................................... .......... ......... .. 0.6 pL_sec pL_sec .... ................................................................................................................................................ .......... .... 0.5 pL_sec pL_sec ..... ................................................................................................................................................................. .... 0.4 pL_sec pL_sec ...... ...................................................................................................................................................................... 0.3 pL_sec pL_sec ....... ....................................................................................................................................................................... 0.2 pL_sec ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ P_3_acc bbebbbbbbbbbbbbbeeebeeeeeeeeebeeebbee ebeb ebbeeeeeeebbbeb bebbbeb eebbbeb bebbbeb eeb bebebbbeeeeeeeeeeeeeeeeebebbbebbbebbbebbeeebeeeeeee eebeeeeeeeeeeebeebeeeeeb ebeeeeeee bbbbbb PHD_acc 100% PHD_acc PHD_acc 81% PHD_acc PHD_acc . . ... .... . . . ... .. ....... ... . . . .... . . .. .. .. .. ... ... 64% PHD_acc PHD_acc . ... ......... ... .. . . . ....... . . . .. . . . .. . . ................. . . . . ... ....... .. ........... .. ..... . ....... 49% PHD_acc PHD_acc . ... ......... ... .... . .. ....... . . . . ... . . . . ... . . . ................. . . . . ... .......... ........... .. ..... . ....... 36% PHD_acc PHD_acc . ... ......... ... .... . .. ....... . . . . ... . . . . ... . . . ................. . . . . ... .......... ........... .. ..... .. ........ 25% PHD_acc PHD_acc . ... ......... ... .... . .. ....... . . . . ... . . . . ... . . . ................. . . . . ... .......... ........... .. ..... .. ........ 16% PHD_acc PHD_acc . ... ......... ... .... . .. ....... . . . . ... . . . . ... . . . ................. . . . . ... .......... ........... .. ..... .. ........ 9% PHD_acc PHD_acc . ... ......... ... .... . .. ....... . . . . ... . . . . ... . . . ................. . . . . ... .......... ........... .. ..... .. ........ 4% PHD_acc ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

%A: 5.0	%C: 1.7	%D: 2.8	%E: 1.7	%F: 1.7
%G: 23.3	%H: 5.0	%I: 1.1	%K: 3.9	%L: 3.9
%M: 4.4	%N: 5.6	%P: 8.3	%Q: 5.6	%R: 4.4
%S: 5.0	%T: 2.2	%V: 3.9	%W: 5.0	%Y: 5.6

AA :	amino acid sequence
PHD_sec:	PHD predicted secondary structure: H=helix, E=extended (sheet), blank=other (loop) PHD = PHD: Profile network prediction HeiDelberg
Rel_sec:	reliability index for PHDsec prediction (0=low to 9=high) Note: for the brief presentation strong predictions marked by '*'
SUB_sec:	subset of the PHDsec prediction, for all residues with an expected average accuracy > 82% (tables in header) NOTE: for this subset the following symbols are used: L: is loop (for which above ' ' is used) .: means that no prediction is made for this residue, as the reliability is: Rel < 5

pH_sec:	'probability' for assigning helix (1=high, 0=low)
pE_sec:	'probability' for assigning strand (1=high, 0=low)
pL_sec:	'probability' for assigning neither helix, nor strand (1=high, 0=low)
P_3_acc:	PHD predicted relative solvent accessibility (acc) in 3 states: b = 0-9%, i = 9-36%, e = 36-100%.
Rel_acc:	reliability index for PHDacc prediction (0=low to 9=high) Note: for the brief presentation strong predictions marked by '*'
SUB_acc:	subset of the PHDacc prediction, for all residues with an expected average correlation > 0.69 (tables in header) NOTE: for this subset the following symbols are used: I: is intermediate (for which above ' ' is used) .: means that no prediction is made for this residue, as the reliability is: Rel < 4

PHD_acc:	PHD predicted relative solvent accessibility (acc) in 10 states: a value of n (=0-9) corresponds to a relative acc. of between nn % and (n+1)(n+1) % (e.g. for n=5: 16-25%).