Coils output appended by default
Note 1: comments marked by "## COMMENT: "
Note 2: to surpress a prediction of COILED coil regions use in the input the keyword no coils
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--- COILS HEADER: SUMMARY
COILS version 2.2: R.B. Russell, A.N. Lupas, 1999
using MTK matrix.
weights: a,d=2.5 and b,c,e,f,g=1.0
For the threshold of 5 ( probability > 0.5):
>prot
window size = 14 14 residues in coiled coil domain
window size = 21 35 residues in coiled coil domain
window size = 28 42 residues in coiled coil domain
. : . : . : . : . 5
seq MSEYQPSLFALNPMGFSPLDGSKSTNENVSASTSTAKPMVGQLIFDKFIK
frame-14 abcdefgabcdefgbabcabcdefgabcdefgefgfgfgaabcdefgabc
frame-21 abcdefaabcdabababcabcabcdefgabcdefgabcdefgdefgcdef
frame-28 abcdefgabcdefgabcdabcdefgabcdefgabcdefgabcdefgabcd
prob-14 --------------------------------------------------
prob-21 --------------------------------------------------
prob-28 --------------------------------------------------
. : . : . : . : . 10
seq TEEDPIIKQDTPSNLDFDFALPQTATAPDAKTVLPIPELDDAVVESFFSS
frame-14 defgdefgbcdefgabcdefgbcdefgefgeabcdabcabcdefgabcde
frame-21 gabcdefgabcdefgbcdefgbcdefggeabcdefgabcdefaabcdefg
frame-28 efgcdefgbcdefgabcdefgbcdefgbcabcdefabcabcdefgabcde
prob-14 --------------------------------------------------
prob-21 --------------------------------------------------
prob-28 --------------------------------------------------
. : . : . : . : . 15
seq STDSTPMFEYENLEDNSKEWTSLFDNDIPVTTDDVSLADKAIESTEEVSL
frame-14 fgabcdabcabcdefgabcdefgefggabaabcaabcdefgabcdefgef
frame-21 ababcdefgabcdefgabcdefgabcdabcdefgabcdefgabcdefgef
frame-28 fgabcdefgabcdefgabcdabcdefgabcdefgabcdefgabcdefgbc
prob-14 ---------11111111111111---------------------------
prob-21 --------------------------------------------------
prob-28 --------------------------------------------------
. : . : . : . : . 20
seq VPSNLEVSTTSFLPTPVLEDAKLTQTRKVKKPNSVVKKSHHVGKDDESRL
frame-14 gdefgefgefgfgaabcabcdefgabcdefgdefgabcdefgabcdefga
frame-21 gabcdefgefgfgaabcabcdefgabcdefgabcdabcdefgabcdefga
frame-28 defgabcdefgdefabcabcdabcdefgabcdefgabcdefgabcdefga
prob-14 --------------------------------------------------
prob-21 --------------------------------------------------
prob-28 --------------------------------------------------
. : . : . : . : . 25
seq DHLGVVAYNRKQRSIPLSPIVPESSDPAALKRARNTEAARRSRARKLQRM
frame-14 bcdefgabcdefgcdefgeabcabcdaabcdefgabcdefgfabcdefga
frame-21 bcdefgabcdefgggfggaabcdeababcabcdefabcdefgabcdefga
frame-28 bcdefgabcdefgfgefgbabcabcdeaabcdabcabcdefgabcdefga
prob-14 ------------------------------------------22222229
prob-21 -----------------------------------222222299999999
prob-28 -----------------------------------999999999999999
. : . : . : . : . 30
seq KQLEDKVEELLSKNYHLENEVARLKKLVGER
frame-14 bcdefgabcdefgabcdefgabcdefgefgg
frame-21 bcdefgabcdefgabcdefgabcdefgefgg
frame-28 bcdefgabcdefgabcdefgabcdefgefgg
prob-14 999999999999944444441111111----
prob-21 999999999999999999998888888----
prob-28 999999999999999999999999999----
// End
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