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META

The META PredictProtein server

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  1. Miscellaneous services
    1. SignalP prediction of presence and location of signal peptide cleavage sites in amino acid sequences from different organisms
    2. NetOglyc prediction of mucin type GalNAc O-glycosylation sites in mammalian proteins.
    3. NetPicoRNA predictions of cleavage sites of picornaviral proteases.
    4. ChloroP predictions of whether or not a protein contains an N-terminal chloroplast transit peptide, cTP, and of probable sites for cleavage of the transit peptide.
  2. Secondary structure prediction
    1. JPRED consensus method for protein secondary structure prediction.
  3. Transmembrane helices
    1. TMHMM prediction the location of transmembrane helices and their topology.
    2. TOPPRED prediction of location and orientation of transmembrane helices.
    3. DAS prediction of location of transmembrane helices.
  4. Threading (remote homology search)
    1. FRSVR prediction-based threading, also incorporating purely sequence-based database searches.
    2. SAMT98 hidden Markov model method (SAM-T98) for finding remote homologs of protein sequences.
  5. Homology modelling
    1. SWISS-MODEL prediction of 3D structure by homology modelling (automated server).
    2. CPHmodels prediction of 3D structure by homology modelling through a collection of methods and databases developed to predict protein structures.

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