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Contents: Software

  1. General
  2. Documentation
  3. Protein structure/NMR
  4. Alignments
  5. Homology modelling
  6. Homology modelling
  7. Threading



Software

General
  • EBI:     Software
  • ExPASy:     The ExPASy Molecular Biology Server List of documents concerning molecular biology oriented services, software, email servers, FTP sites, etc.
  • UnixLessons:     Unix Lessons from Dr.Friedman's course page.
  • Perl Journal:     Perl journal Online


Documentation
  • EMBL:     software documentation


Protein structure/NMR
  • XPLOR:     Axel Brunger's Research Group and the X-PLOR Home Page.


Alignments
  • Phylogeny:     PHYLIP phylogeny inference package


Homology modelling
  • SWISS-MODEL:     An automated knowledge-based protein modelling server ; first approach and optimise (Peitsch M.C. Protein Modelling by E-mail. Bio/Technology 13:658-660. (1995)
  • COMPOSER:     comp
  • DRAGON:     Dragon
  • MODELLER:     homology protein structure modelling
  • Manuals:     Manuals and documentation
  • WHAT IF:     3D modelling services


Homology modelling
  • InsightII:     Molecular simulations
  • LOOK:     Molecular applications group
  • QUANTA:     Molecular modelling and simulation service
  • SYBYL:     computations using common interface


Threading
  • Threader2:     David Jones threading program.


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